Package: CNVrd2
Type: Package
Title: CNVrd2: a read depth-based method to detect and genotype complex common copy number variants from next generation sequencing data.
Version: 1.49.0
Date: 2014-10-04
Author: Hoang Tan Nguyen, Tony R Merriman and Mik Black
Depends: R (>= 3.0.0), methods, 
        VariantAnnotation, parallel, rjags, ggplot2, gridExtra
VignetteBuilder: knitr
Suggests: knitr
Maintainer: Hoang Tan Nguyen <hoangtannguyenvn@gmail.com>
Description: CNVrd2 uses next-generation sequencing data to measure human gene copy number for multiple samples,
	indentify SNPs tagging copy number variants and detect copy
        number polymorphic genomic regions.
License: GPL-2
Imports: DNAcopy, IRanges, Rsamtools
biocViews: CopyNumberVariation, SNP, Sequencing, Software, Coverage, LinkageDisequilibrium, Clustering.
Collate: AllClasses.R AllGenerics.R countReadInWindow.R
        segmentSamples.R segmentSamplesUsingPopInformation.R identifyPolymorphicRegion.R 
        plotPolymorphicRegion.R emnormalCNV.R groupCNVs.R searchGroupCNVs.R
        groupBayesianCNVs.R plotCNVrd2.R calculateLDSNPandCNV.R
URL: https://github.com/hoangtn/CNVrd2
Packaged: 2014-10-04 07:02:44 UTC; root
git_url: https://git.bioconductor.org/packages/CNVrd2
git_branch: devel
git_last_commit: 1ed26d8
git_last_commit_date: 2025-10-29
Repository: Bioconductor 3.23
