Package: CNVfilteR
Type: Package
Title: Identifies false positives of CNV calling tools by using SNV calls
Version: 1.25.0
Authors@R:
    c(person(
        given = "Jose Marcos",
        family = "Moreno-Cabrera",
        role = c("aut", "cre"),
        email = "jpuntomarcos@gmail.com",
        comment = c(ORCID = "0000-0001-8570-0345")
    ), person(
        given = "Bernat",
        family = "Gel",
        role = "aut"
    ))
Description: CNVfilteR identifies those CNVs that can be discarded by using the single nucleotide variant (SNV) calls that are usually obtained in common NGS pipelines.
License: Artistic-2.0
URL: https://github.com/jpuntomarcos/CNVfilteR
Encoding: UTF-8
RoxygenNote: 7.1.1
Depends: R (>= 4.3)
Imports: 
  IRanges,
  GenomicRanges,
  SummarizedExperiment,
  pracma,
  regioneR,
  assertthat,
  karyoploteR,
  CopyNumberPlots,
  graphics,
  utils,
  VariantAnnotation,
  Rsamtools,
  GenomeInfoDb,
  Biostrings,
  methods
Suggests: 
  knitr,
  BiocStyle,
  BSgenome.Hsapiens.UCSC.hg19,
  BSgenome.Hsapiens.UCSC.hg19.masked,
  rmarkdown
biocViews: CopyNumberVariation, Sequencing, DNASeq, Visualization, DataImport
VignetteBuilder: knitr
BugReports: https://github.com/jpuntomarcos/CNVfilteR/issues
git_url: https://git.bioconductor.org/packages/CNVfilteR
git_branch: devel
git_last_commit: e65bd7a
git_last_commit_date: 2025-10-29
Repository: Bioconductor 3.23
