Package: BG2
Type: Package
Title: Performs Bayesian GWAS analysis for non-Gaussian data using BG2
Version: 1.11.0
Authors@R: 
  c(person(given = "Jacob",
           family = "Williams",
           role = c("aut", "cre"),
           email = "jwilliams@vt.edu",
           comment = c(ORCID = "0000-0002-6425-1365")),
    person(given = "Shuangshuang",
           family = "Xu",
           role = "aut"),
    person(given = "Marco",
           family = "Ferreira",
           role = "aut",
           comment = c(ORCID = "0000-0002-4705-5661")))
Description: This package is built to perform GWAS analysis for non-Gaussian data using BG2. The BG2 method uses penalized quasi-likelihood along with nonlocal priors in a two step manner to identify SNPs in GWAS analysis. The research related to this package was supported in part by National Science Foundation awards DMS 1853549 and DMS 2054173.
License: GPL-3 + file LICENSE
Encoding: UTF-8
LazyData: false
biocViews: Bayesian, AssayDomain, SNP, GenomeWideAssociation
Imports: 
  GA (>= 3.2),
  caret (>= 6.0-86),
  memoise (>= 1.1.0),
  Matrix (>= 1.2-18),
  MASS (>= 7.3-58.1),
  stats (>= 4.2.2)
Depends:
  R (>= 4.2.0)
Suggests:
    BiocStyle,
    knitr,
    rmarkdown,
    formatR,
    rrBLUP,
    testthat (>= 3.0.0)
RoxygenNote: 7.2.2
VignetteBuilder: knitr
Config/testthat/edition: 3
git_url: https://git.bioconductor.org/packages/BG2
git_branch: devel
git_last_commit: 7d14422
git_last_commit_date: 2025-10-29
Repository: Bioconductor 3.23
