Package: AnnotationHubData
Type: Package
Title: Transform public data resources into Bioconductor Data Structures
Version: 1.41.0
Encoding: UTF-8
Authors@R: c(
	person("Martin", "Morgan", role="ctb"),
	person("Marc", "Carlson", role="ctb"),
	person("Dan", "Tenenbaum", role="ctb"),
	person("Sonali", "Arora", role="ctb"),
	person("Paul", "Shannon", role="ctb"),
	person("Lori", "Shepherd", role="ctb"),
	person("Bioconductor Package Maintainer",
	    email="maintainer@bioconductor.org", role="cre")
	)
Depends: R (>= 3.2.2), methods, utils, S4Vectors (>= 0.7.21),
    IRanges (>= 2.3.23), GenomicRanges, AnnotationHub (>= 2.15.15)
Suggests: RUnit, knitr, BiocStyle, grasp2db, GenomeInfoDbData, rmarkdown, HubPub
Imports: GenomicFeatures, Rsamtools, rtracklayer, BiocGenerics,
    jsonlite, BiocManager, biocViews, BiocCheck, graph,
    AnnotationDbi, Biobase, Biostrings, DBI, Seqinfo,
    GenomeInfoDb (>= 1.45.5), OrganismDbi, RSQLite,
    AnnotationForge, futile.logger (>= 1.3.0), XML, RCurl
Description: These recipes convert a wide variety and a growing number of
    public bioinformatic data sets into easily-used standard Bioconductor data
    structures.
License: Artistic-2.0
LazyLoad: yes
biocViews: DataImport
VignetteBuilder: knitr
Collate:
    Message-class.R
    ImportPreparer-class.R
    makeAnnotationHubResource.R
    HubMetadata-class.R
    AnnotationHubMetadata-class.R
    utils.R
    updateResources.R
    ahmToJson.R
    webAccessFunctions.R
    makeChEA.R
    makedbSNPVCF.R
    makeEncodeDCC.R
    makeEnsemblGtfToGRanges.R
    makeEnsemblFasta.R
    makeEpigenomeRoadmap.R
    makeGencodeFasta.R
    makeGencodeGFF.R
    makeGrasp2Db.R
    makeHaemCode.R
    makeInparanoid8ToDbs.R
    makeNCBIToOrgDbs.R
    makeStandardOrgDbsToSqlite.R
    makeStandardTxDbsToSqlite.R
    makeRefNet.R
    makeUCSCChain.R
    makeUCSC2Bit.R
    makeUCSCTracks.R
    trackWithAuxiliaryTableToGRangesRecipe.R
    UCSCTrackUpdateChecker.R
    makeEnsemblTwoBit.R
    validationFunctions.R
git_url: https://git.bioconductor.org/packages/AnnotationHubData
git_branch: devel
git_last_commit: 932837e
git_last_commit_date: 2025-10-29
Repository: Bioconductor 3.23
