Package: Aerith
Title: visualization and annotation of isotopic enrichment patterns of peptides and metabolites with stable isotope labeling from proteomics and metabolomics 
Version: 0.99.11
Authors@R: person("Yi", "Xiong", email = "yixiong@ou.edu", role = c("aut", "cre"), comment = c(ORCID = "0009-0005-4591-2366"))
Description: Visualisation of peptide isotopic peaks and SIP peptide spectra match (PSM). Filtration of high quality PSM. Accurate isotopic abundance calculation of peptide and metabolites. Visualisation of SIP proteomics results.
Depends: R (>= 4.4.0)
License: GPL-3
Encoding: UTF-8
ByteCompile: TRUE
Suggests: 
    knitr,
    rmarkdown,
    testthat,
RoxygenNote: 7.3.3
Roxygen: list(markdown = TRUE)
LinkingTo: 
    Rcpp
Imports:
    mzR,
    MSnbase,
    methods, 
    Rcpp,
    ggplot2,
    ggrepel,
    ggnewscale,
    dplyr,
    tidyr,
    stringr,
    data.table,
    scales
SystemRequirements: C++17
VignetteBuilder: knitr
Config/build/vignettes: FALSE
biocViews: Proteomics, Metabolomics, MassSpectrometry, Software, Visualization, QualityControl, Annotation
URL: https://github.com/xyz1396/Aerith
BugReports: https://github.com/xyz1396/Aerith/issues
git_url: https://git.bioconductor.org/packages/Aerith
git_branch: devel
git_last_commit: 4583495
git_last_commit_date: 2025-11-12
Repository: Bioconductor 3.23
