Package: APAlyzer
Type: Package
Title: A toolkit for APA analysis using RNA-seq data
Version: 1.25.0
Description: Perform 3'UTR APA, Intronic APA and gene expression analysis using RNA-seq data.
Authors@R: c(person("Ruijia", "Wang", role=c("cre", "aut"),
                email="rjwang.bioinfo@gmail.com", 
                comment = c(ORCID = "0000-0002-4211-5207")), 
				person("Bin", "Tian", role="aut"),
				person("Wei-Chun", "Chen", role="aut"))
biocViews: Sequencing, RNASeq, DifferentialExpression, GeneExpression,
        GeneRegulation, Annotation, DataImport, Software
Imports: GenomicRanges, GenomicFeatures, GenomicAlignments, DESeq2, ggrepel,
        SummarizedExperiment, Rsubread, stats, ggplot2, methods, rtracklayer,
        VariantAnnotation, dplyr, tidyr, repmis, Rsamtools, HybridMTest
Suggests: knitr, rmarkdown, BiocStyle, org.Mm.eg.db, AnnotationDbi, TBX20BamSubset, testthat, pasillaBamSubset
URL: https://github.com/RJWANGbioinfo/APAlyzer/
BugReports: https://github.com/RJWANGbioinfo/APAlyzer/issues
VignetteBuilder: knitr
License: LGPL-3
Encoding: UTF-8
Depends: R (>= 3.5.0)
git_url: https://git.bioconductor.org/packages/APAlyzer
git_branch: devel
git_last_commit: 5b343c9
git_last_commit_date: 2025-10-29
Repository: Bioconductor 3.23
