############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data GeoTcgaData ### ############################################################################## ############################################################################## * checking for file ‘GeoTcgaData/DESCRIPTION’ ... OK * preparing ‘GeoTcgaData’: * checking DESCRIPTION meta-information ... OK * installing the package (it is needed to build vignettes) * creating vignettes ... ERROR --- re-building ‘GeoTcgaData.Rmd’ using rmarkdown Quitting from GeoTcgaData.Rmd:253-256 [unnamed-chunk-9] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: ! object 'load_OrgDb' is not exported by 'namespace:GOSemSim' --- Backtrace: ▆ 1. ├─GeoTcgaData::id_conversion_TCGA(profile) 2. └─base::loadNamespace(x) 3. ├─base::namespaceImportFrom(...) 4. │ └─base::asNamespace(ns) 5. └─base::loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) 6. └─base::namespaceImportFrom(...) 7. └─base::importIntoEnv(impenv, impnames, ns, impvars) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: processing vignette 'GeoTcgaData.Rmd' failed with diagnostics: object 'load_OrgDb' is not exported by 'namespace:GOSemSim' --- failed re-building ‘GeoTcgaData.Rmd’ SUMMARY: processing the following file failed: ‘GeoTcgaData.Rmd’ Error: Vignette re-building failed. Execution halted