############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data DeeDeeExperiment ### ############################################################################## ############################################################################## * checking for file ‘DeeDeeExperiment/DESCRIPTION’ ... OK * preparing ‘DeeDeeExperiment’: * checking DESCRIPTION meta-information ... OK * installing the package (it is needed to build vignettes) * creating vignettes ... ERROR --- re-building ‘DeeDeeExperiment_manual.Rmd’ using rmarkdown Failed with error: 'object 'load_OrgDb' is not exported by 'namespace:GOSemSim'' Quitting from DeeDeeExperiment_manual.Rmd:467-470 [clusterPro] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error in `.requirePackage()`: ! unable to load required package 'DOSE' --- Backtrace: ▆ 1. └─utils::head(clusterPro_res$ifng_vs_naive) 2. └─methods (local) ``(``, ``, ``) 3. └─methods:::.findInheritedMethods(classes, fdef, mtable) 4. └─methods::getClass(cl1, where = where, .Force = TRUE) 5. └─methods::getClassDef(Class, where) 6. └─methods:::.requirePackage(package) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: processing vignette 'DeeDeeExperiment_manual.Rmd' failed with diagnostics: unable to load required package 'DOSE' --- failed re-building ‘DeeDeeExperiment_manual.Rmd’ --- re-building ‘dde_with_single_cell.Rmd’ using rmarkdown --- finished re-building ‘dde_with_single_cell.Rmd’ SUMMARY: processing the following file failed: ‘DeeDeeExperiment_manual.Rmd’ Error: Vignette re-building failed. Execution halted